Links

Arizona State University

School of Molecular Sciences

The Biodesign Institute

LeRoy Eyring Center for Solid State Science (LECSSS)

ASU Research Computing Facility

3DEM

EMPIAR (Electron Microscopy Pilot Image Archive)

NRAMM (Natinoal Resource for Automated Molecular Microscopy)

PNCC (Pacific Northwest Center for Cryo-EM)

Chemistry at HARvard Macromolecular Mechanics (CHARMM)

Deutsches Elektronen-Synchrotron (DESY)

The Human Protein Atlas

SBGrid Consortium

Theoretical and Computational Biophysics Group @ UIUC

HPC on Mac OS X

SPIDER (System for Processing Image Data from Electron microscopy and Related fields)

FindMySequence - "A neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM."

DeepTracer - "Ultra-fast, fully automated and accurate de novo macromolecular complex structure prediction and identification from 3D electron density maps using 3D deep learning."

BioRender.

ChimeraX recipes and Python functions and structures for scripting.

https://cryoem101.org/

Warp - Advanced, real-time cryo-EM data pre-processing.

Biochemical recipes - https://plchiulab.gitbook.io/biochemical-recipes/

Protein characterization procedures - https://plchiulab.gitbook.io/protein-characterization/

Blankenship, Robert E. Molecular Mechanisms of Photosynthesis. 2nd ed., Wiley Blackwell, 2014.

Cantor and Schimmel. Biophysical Chemistry. Freeman, 1980.

Duda, R.O., Hart, P.E., and Stork, D.G. Pattern Classification. 2nd ed., John Wiley & Sons, 2001.

Goodman, J.W. Introduction to Fourier Optics. 4th ed., W.H. Freeman, 2017.

Kirkland, E.J. Advanced Computing in Electron Microscopy. 2nd ed., Springer, 2010.

Spence, John C.H. High-Resolution Electron Microscopy. 4th ed., Oxford University Press, 2013.